G NOME Whole Blood Kit
Genomic DNA Isolation from Whole Blood
Revision No. 2011-999-6G01W
Shipping and Storage
The kit is shipped at ambient temperature. However, upon arrival, store
Protease Mixx at 4°C. A few days at ambient temperature does not affect
activity of this reagent. A precipitate (often appears fungus-like) is
sometimes evident after storage. Remove through centrifugation. Protease
activity is not affected.
Introduction
The G NOME Whole Blood DNA Isolation Kit is used to efficiently isolate
high molecular weight genomic DNA from whole blood. Each preparation
yields up to 100 µg of genomic DNA from 2 ml of whole blood;
preparation sizes can be scaled up or down. The DNA is suitable for
restriction enzyme digestion or PCR amplification usually 2-3 hours after
cell lysis; much of the time involves a protease incubation. The procedure
does not use organic extractions.
The G NOME Whole Blood DNA Isolation Kit is available in 3 sizes to
suit your needs: 10, 25, and 100 preparations/kit. The kit contains Ace
Blood Solution to eliminate hemoglobin/heme/porphyrins (that can inhibit
PCR reactons) by lysing cell membranes. Purified nuclei are lysed with
Cell Lysis/Denaturing Solution. The kit utilizes RNase Mixx to eliminate
RNA immediately after lysis, and Protease Mixx to degrade cellular
proteins. This is followed by a proprietary "salting-out"
technique which precludes the need for phenol, chloroform, or other
organic extractions. The DNA is precipitated with ethanol, pelleted by
centrifugation, and dissolved in TE.
| The following protocol is for 2 ml of whole
blood or 500 ul of packed cells. The protocol can be altered accordingly
for larger or smaller volumes. |
Protocol
Expected yield: 25-50 µg DNA/ml whole blood depending on
nucleated cell count.
- Centrifuge the whole blood for 5 minutes at 500 x g to sediment
the cells. Carefully aspirate most of the plasma, being careful not to
disturb cell pellet.
- Add 2.5x volumes of Ace Blood Solution and mix gently by inverting the
tube. Centrifuge 15 minutes at 1000-1500 x g. Decant the supernate.
Repeat wash with similar volume (2.5x) of the Ace Blood Solution. The
result should be a slightly pink to white nuclear pellet.
- Resuspend nuclei in 1.85 ml Cell Suspension Solution. (Use a 15 ml
clear plastic tube for efficient mixing). Mix until the suspension appears
homogeneous.
- Add 50 µl of RNase Mixx; mix thoroughly.
- Add 100 µl of Cell Lysis/Denaturing Solution**; mix well.
**If a precipitate forms in stock solution, heat to 60°C to dissolve
before using.
- Incubate at 55°C for 15 minutes.
- Add 25 µl Protease Mixx; mix thoroughly.
- Incubate at 55°C for 30 to 120 minutes. (The longer time
will result in minimal protein carry-over and will also allow for
substantial reduction in protease activity).
- Add 500 µl "Salt-Out" Mixture; mix gently yet
thoroughly. Divide sample into two 1.5 ml tubes. Refrigerate at 4°C for
10-20 minutes to produce a visible precipitate.
- Centrifuge for 10 minutes at high speed (12,000 x g) in a
microcentrifuge. Carefully collect the supernate, avoiding the pellet. If
a precipitate remains in the supernate, centrifuge again until it is
clear. Transfer the supernate to a 15 ml (or larger) translucent
polypropylene tube (e.g., Falcon 2059).
- To this supernate, add 2 ml TE buffer and 8 ml of 100% ethanol. Gently
mix the solution by inverting the tube and hold it at room temperature for
5-10 minutes. Centrifuge for 15 minutes at 1000-1500 x g. Carefully decant
or aspirate the supernatant and eliminate the excess ethanol by air drying
the DNA pellet.
- Dissolve the genomic DNA in sterile (autoclaved) TE (10
mM Tris pH 7.5, 1 mM EDTA).
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